Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs117024285 | chr11:34842412 | A/G | 8.24E-8 | 507 | 37.53 | 32.23 | 3.3 | KM Plot |
KIRC | rs11706221 | chr3:48373262 | G/A | 7.57E-6 | 490 | 37.53 | 39.03 | 21.73 | KM Plot |
KIRC | rs11706277 | chr3:48360433 | A/G | 1.77E-6 | 509 | 37.67 | 37.75 | 17.55 | KM Plot |
KIRC | rs11707606 | chr3:48237087 | A/C | 2.31E-5 | 499 | 37.7 | 37.02 | 23.1 | KM Plot |
KIRC | rs11707997 | chr3:48377875 | A/G | 9.89E-6 | 488 | 37.47 | 39.03 | 21.73 | KM Plot |
KIRC | rs11709691 | chr3:48303669 | A/G | 5.58E-5 | 492 | 37.7 | 36.4 | 23.1 | KM Plot |
KIRC | rs11710257 | chr3:48373214 | T/G | 9.86E-6 | 489 | 37.47 | 38.83 | 21.73 | KM Plot |
KIRC | rs117109255 | chr11:49176058 | A/G | 5.48E-8 | 508 | 37.18 | 37.7 | 6.7 | KM Plot |
KIRC | rs117124159 | chr18:33207664 | A/C | 3.23E-5 | 509 | 37.75 | 31.77 | 7.37 | KM Plot |
KIRC | rs117133710 | chr19:56148966 | T/G | 2.36E-7 | 491 | 37.77 | 35.43 | 6.02 | KM Plot |
KIRC | rs11714176 | chr3:48360862 | C/T | 7.23E-6 | 507 | 37.53 | 37.77 | 19.13 | KM Plot |
KIRC | rs11714944 | chr3:48366971 | C/A | 2.88E-5 | 502 | 37.47 | 38.83 | 22.42 | KM Plot |
KIRC | rs11715776 | chr3:48377611 | G/C | 9.89E-6 | 488 | 37.47 | 39.03 | 21.73 | KM Plot |
KIRC | rs11715799 | chr3:48255220 | A/G | 1.52E-5 | 494 | 37.73 | 37.47 | 21.12 | KM Plot |
KIRC | rs11715876 | chr3:48377922 | G/A | 1.19E-5 | 488 | 37.5 | 38.83 | 21.73 | KM Plot |